HTSplotter
An end-to-end data processing, analysis and visualisation tool for chemical and genetic in vitro perturbation screens
Example files
Input example files for each experiment type. For more information, please check the manual.
| Experiment type | Input file | Results visualization | Output files |
|---|---|---|---|
| Drug screen | drugscreen_1timepoint | download | |
| drugscreen_severaltimepoint_1control | download | ||
| drugscreen_severaltimepoint_severalcontrol | download | ||
| Drug combination | drug_combination_screen_1timepoint | download | |
| drug_combination_several_time_points | download | ||
| drug_combination_several_time_points_repetitive_conditions | download | ||
| Genetic perturbagen | gene_perturbagen_1timepoint_1control | download | |
| gene_perturbagen_severaltimepoints | download | ||
| Genetic-chemical perturbagen | genetic-chemical_perturbagen_1time_point | download | |
| genetic-chemical_perturbagen_several-time_points | download |
How to refer to this software?
Carolina Nunes, Jasper Anckaert, Fanny De Vloed, Jolien De Wyn, Kaat Durinck, Jo Vandesompele, Frank Speleman and Vanessa Vermeirssen, "Automatic end-to-end analysis of high-throughput in vitro cell culture screening by HTSplotter", 2021
Source code available at HTSplotter, under GPLV3 license